STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDB27226.1Ribonuclease; Product inferred by homology to UniProt. (534 aa)    
Predicted Functional Partners:
gpmI
2 3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.934
polA
dNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.781
rpoB
dNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.747
rpoZ
dNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
  0.741
rpoA
dNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.710
CDB25497.1
Putative hydrolase; Product inferred by homology to UniProt.
  
 0.694
CDB26291.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
  
 0.613
CDB27209.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
  
 0.613
CDB26272.1
Putative RNA helicase; Product inferred by homology to UniProt; Belongs to the DEAD box helicase family.
  
 
 0.590
CDB27227.1
23S rRNA (Uracil-5-)-methyltransferase RumA; Product inferred by homology to UniProt; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
  
    0.568
Your Current Organism:
Oscillibacter sp. CAG241
NCBI taxonomy Id: 1262911
Other names: O. sp. CAG:241, Oscillibacter sp. CAG:241
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