STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDE61991.1single-stranded-DNA-specific exonuclease RecJ; Product inferred by homology to UniProt. (575 aa)    
Predicted Functional Partners:
CDE61997.1
aTP-dependent DNA helicase RecQ; Product inferred by homology to UniProt.
   
 0.702
mutS
dNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
 
  
 0.607
CDE65681.1
Single-stranded DNA-binding protein; Product inferred by homology to UniProt.
  
 
 0.566
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
 
     0.563
polA
dNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
   
 0.557
CDE64110.1
Putative ATP-dependent DNA helicase; Product inferred by homology to UniProt.
   
 0.557
CDE61983.1
Putative chloride channel protein; Product inferred by homology to UniProt.
 
     0.518
CDE60604.1
dNA mismatch repair protein MutL; Product inferred by homology to UniProt; Belongs to the DNA mismatch repair MutL/HexB family.
  
   
 0.516
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
 
 
 0.511
CDE60680.1
recQ family ATP-dependent DNA helicase; Product inferred by homology to UniProt.
  
 
 0.509
Your Current Organism:
Parabacteroides sp. CAG409
NCBI taxonomy Id: 1262913
Other names: P. sp. CAG:409, Parabacteroides sp. CAG:409
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.