STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCZ11382.1Ribonuclease Rne/Rng family; Product inferred by homology to UniProt. (524 aa)    
Predicted Functional Partners:
CCZ11316.1
Phosphotransferase enzyme family protein; Product inferred by homology to UniProt.
   
 
 0.828
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
    
 0.750
CCZ12088.1
dNA polymerase III subunit epsilon domain protein; Product inferred by homology to UniProt.
    
 0.682
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
 
 0.655
CCZ13576.1
polyA polymerase family protein; Product inferred by homology to UniProt; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
 
 0.652
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
  
 
 0.652
CCZ11676.1
Formaldehyde transketolase; Product inferred by homology to UniProt; Belongs to the transketolase family.
   
  0.642
CCZ11677.1
Transketolase thiamine diphosphate binding domain protein; Product inferred by homology to UniProt.
   
  0.642
CCZ10987.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
     
 0.628
CCZ13328.1
cCA-adding tRNA nucleotidyltransferase; Product inferred by homology to UniProt; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
 
 0.617
Your Current Organism:
Prevotella sp. CAG1092
NCBI taxonomy Id: 1262919
Other names: P. sp. CAG:1092, Prevotella sp. CAG:1092
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