STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDD01260.1aMP-binding enzyme; Product inferred by homology to UniProt. (555 aa)    
Predicted Functional Partners:
CDD01258.1
Putative long-chain-fatty-acid--CoA ligase; Product inferred by homology to UniProt.
 
  
 
0.986
CDC97581.1
acyl-CoA dehydrogenase; Product inferred by homology to UniProt.
  
 0.956
CDD01009.1
long-chain-fatty-acid--CoA ligase; Product inferred by homology to UniProt.
  
  
 
0.900
CDD01262.1
aBC superfamily ATP binding cassette transporter permease protein; Product inferred by homology to UniProt.
       0.633
CDD01095.1
maoC domain protein; Product inferred by homology to UniProt.
  
 
 0.615
rplE
50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.566
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
    
 
 0.556
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.541
CDC97583.1
Electron transfer flavoprotein domain protein; Product inferred by homology to UniProt.
  
 
  0.519
CDD01263.1
Aspartate aminotransferase; Product inferred by homology to UniProt.
  
    0.503
Your Current Organism:
Prevotella sp. CAG474
NCBI taxonomy Id: 1262926
Other names: P. sp. CAG:474, Prevotella sp. CAG:474
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.