STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDE53201.1Putative uncharacterized protein; Product inferred by homology to UniProt. (243 aa)    
Predicted Functional Partners:
CDE55210.1
dNA processing protein DprA; Product inferred by homology to UniProt.
 
 
 0.903
CDE53397.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
  
  
 0.870
CDE53200.1
Helicase RecD/TraA family; Product inferred by homology to UniProt.
       0.856
CDE52773.1
Late competence development protein ComFB; Product inferred by homology to UniProt.
  
  
 0.851
CDE55214.1
Putative uncharacterized protein; Product inferred by homology to UniProt; Belongs to the flagella basal body rod proteins family.
   
   0.829
CDE54534.1
Putative uncharacterized protein; Product inferred by homology to UniProt; Belongs to the UPF0758 family.
 
    0.807
CDE53202.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
  
    0.802
CDE53734.1
Phosphoribosylformylglycinamidine synthase; Product inferred by homology to UniProt.
    
  0.796
CDE55209.1
Mg chelatase subunit ChlI; Product inferred by homology to UniProt.
 
  
 0.785
CDE53345.1
Prephenate dehydrogenase; Product inferred by homology to UniProt.
   
  
 0.771
Your Current Organism:
Roseburia sp. CAG303
NCBI taxonomy Id: 1262944
Other names: R. sp. CAG:303, Roseburia sp. CAG:303
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.