STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDD35340.1dNA mismatch repair protein MutS domain protein; Product inferred by homology to UniProt. (507 aa)    
Predicted Functional Partners:
CDD35071.1
dNA mismatch repair protein MutL; Product inferred by homology to UniProt.
 
 0.995
polA
Putative uncharacterized protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 0.973
CDD36212.1
dNA polymerase III subunit beta; Product inferred by homology to UniProt.
   
 0.971
mutS2
mutS2 protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
 
 
0.777
CDD35339.1
Peptidase M56 BlaR1; Product inferred by homology to UniProt.
       0.613
CDD35226.1
dNA topoisomerase; Product inferred by homology to UniProt.
   
 0.531
CDD35068.1
dNA repair protein RadC; Product inferred by homology to UniProt; Belongs to the UPF0758 family.
 
     0.454
CDD35338.1
Putative transcriptional regulator; Product inferred by homology to UniProt.
       0.419
Your Current Organism:
Roseburia sp. CAG309
NCBI taxonomy Id: 1262945
Other names: R. sp. CAG:309, Roseburia sp. CAG:309
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.