STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDC95272.1Uncharacterized protein; Product inferred by homology to UniProt. (372 aa)    
Predicted Functional Partners:
CDC92846.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
   
 0.876
dapL
lL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate.
       0.598
CDC96213.1
Sulfate permease; Product inferred by homology to UniProt.
  
     0.587
CDC96675.1
Fibronectin type III domain protein; Product inferred by homology to UniProt.
  
     0.582
CDC92577.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
  
     0.562
CDC95237.1
Uncharacterized protein; Product inferred by homology to UniProt.
  
     0.518
CDC95041.1
Predicted protein; Product inferred by homology to UniProt.
  
     0.496
CDC95281.1
groES-like protein; Catalyzes the NADPH dependent reduction of D-ribulose 5- phosphate to D-ribitol 5-phosphate.
 
 
  0.491
CDC96210.1
Sulfate permease; Product inferred by homology to UniProt.
  
     0.482
CDC96233.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
     
 0.454
Your Current Organism:
Roseburia sp. CAG380
NCBI taxonomy Id: 1262946
Other names: R. sp. CAG:380, Roseburia sp. CAG:380
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.