STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDC94460.1Predicted peptidase; Product inferred by homology to UniProt. (389 aa)    
Predicted Functional Partners:
CDC94462.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
 
     0.942
CDC94465.1
Multimeric flavodoxin WrbA; Product inferred by homology to UniProt.
 
     0.796
CDC94500.1
Transcriptional regulator LysR family; Product inferred by homology to UniProt; Belongs to the LysR transcriptional regulatory family.
 
     0.779
CDC94498.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
 
     0.594
CDC94446.1
Flavodoxin; Product inferred by homology to UniProt.
 
     0.577
CDC95672.1
Helix-turn-helix; Product inferred by homology to UniProt.
  
     0.561
CDC94367.1
O-methyltransferase domain protein; Product inferred by homology to UniProt.
  
     0.553
CDC94447.1
Uncharacterized protein; Product inferred by homology to UniProt.
      
0.543
CDC94442.1
Predicted oxidoreductases (Related to aryl-alcohol dehydrogenases); Product inferred by homology to UniProt.
 
     0.524
CDC96496.1
Uncharacterized proteins homologs of microcin C7 resistance protein MccF; Product inferred by homology to UniProt.
  
     0.501
Your Current Organism:
Roseburia sp. CAG380
NCBI taxonomy Id: 1262946
Other names: R. sp. CAG:380, Roseburia sp. CAG:380
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.