STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDE12228.1Putative uncharacterized protein; Product inferred by homology to UniProt. (297 aa)    
Predicted Functional Partners:
CDE12227.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
       0.773
CDE12225.1
Predicted membrane protein; Product inferred by homology to UniProt.
       0.675
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.675
CDE12222.1
Cobalt ABC transporter ATP-binding protein; Product inferred by homology to UniProt.
       0.628
CDE12223.1
Cobalt ABC transporter ATP-binding protein; Product inferred by homology to UniProt.
       0.628
ecfT
Energy-coupling factor transporter transmembrane protein EcfT; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
       0.628
ecfA
Cobalt transport protein ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
       0.619
CDE12229.1
aTPases with chaperone activity ATP-binding subunit; Product inferred by homology to UniProt; Belongs to the ClpA/ClpB family.
       0.523
CDE12220.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
       0.482
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
       0.432
Your Current Organism:
Ruminococcus sp. CAG330
NCBI taxonomy Id: 1262954
Other names: R. sp. CAG:330, Ruminococcus sp. CAG:330
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.