STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDA88817.1Unknown; No significant homology to UniProt. (310 aa)    
Predicted Functional Partners:
CDA88816.1
Glycosyl hydrolase 38 domain protein; Product inferred by homology to UniProt.
       0.773
aroK-2
Shikimate kinase 2; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.773
CDA88815.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
       0.757
CDA88813.1
Unknown; No significant homology to UniProt.
       0.445
CDA88814.1
Haloacid dehalogenase IA family protein; Product inferred by homology to UniProt.
       0.445
Your Current Organism:
Ruminococcus sp. CAG563
NCBI taxonomy Id: 1262961
Other names: R. sp. CAG:563, Ruminococcus sp. CAG:563
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.