STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCZ30963.1Transcriptional regulator MerR family; Product inferred by homology to UniProt. (137 aa)    
Predicted Functional Partners:
CCZ30964.1
Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
  
  
 0.952
CCZ29712.1
Diguanylate cyclase with PAS/PAC sensor; Product inferred by homology to UniProt.
    
 0.952
CCZ30571.1
Sensor histidine kinase; Product inferred by homology to UniProt.
 
 
 0.864
CCZ29795.1
Diguanylate cyclase domain protein / diguanylate phosphodiesterase domain protein; Product inferred by homology to UniProt.
    
 0.864
CCZ30155.1
Putative diguanylate cyclase GGDEF domain; Product inferred by homology to UniProt.
    
 0.858
CCZ30770.1
Pyruvate-flavodoxin oxidoreductase; Product inferred by homology to UniProt.
   
 
 0.844
CCZ29951.1
pAS/PAC sensor hybrid histidine kinase; Product inferred by homology to UniProt.
   
 0.839
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
    0.831
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
    0.798
rpoB
dNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.782
Your Current Organism:
Proteobacteria bacterium CAG495
NCBI taxonomy Id: 1262987
Other names: P. bacterium CAG:495, Proteobacteria bacterium CAG:495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.