STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDF06840.1Aminotransferase DegT/DnrJ/EryC1/StrS family; Product inferred by homology to UniProt; Belongs to the DegT/DnrJ/EryC1 family. (397 aa)    
Predicted Functional Partners:
CDF06842.1
nAD dependent epimerase/dehydratase family protein; Product inferred by homology to UniProt.
  
 
 0.963
CDF08085.1
Undecaprenyl-phosphate glucose phosphotransferase; Product inferred by homology to UniProt.
 
 
 0.944
CDF07522.1
uDP-N-acetylglucosamine 4 6-dehydratase; Product inferred by homology to UniProt.
 
  0.913
CDF08098.1
dTDP-glucose 4 6-dehydratase; Product inferred by homology to UniProt; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.888
CDF06927.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
 
 
 0.878
CDF06848.1
Polysaccharide biosynthesis protein CapD; Product inferred by homology to UniProt.
 
 
  0.875
CDF06841.1
uDP-N-acetylglucosamine 2-epimerase; Product inferred by homology to UniProt; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.854
CDF06098.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
 
 
  0.850
CDF06839.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
 
 
  0.793
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
 
 0.772
Your Current Organism:
Firmicutes bacterium CAG95
NCBI taxonomy Id: 1262988
Other names: F. bacterium CAG:95, Firmicutes bacterium CAG:95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.