STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDF07734.1sCP domain-containing protein; Product inferred by homology to UniProt. (182 aa)    
Predicted Functional Partners:
CDF07442.1
Putative uncharacterized protein; Product inferred by homology to UniProt; Belongs to the binding-protein-dependent transport system permease family.
   
  0.971
CDF07278.1
Bacterial SH3 domain-containing protein; Product inferred by homology to UniProt.
    
 0.787
CDF08647.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
    
  0.708
CDF07097.1
Putative uncharacterized protein; Product inferred by homology to UniProt; Belongs to the peptidase S8 family.
  
  
 0.666
purD
Phosphoribosylamine--glycine ligase; Product inferred by homology to UniProt; Belongs to the GARS family.
    
  0.658
CDF08091.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
 
 
 0.649
pckA
Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
    
  0.599
CDF07144.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
    
  0.599
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.599
CDF08648.1
Putative uncharacterized protein; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).
    
  0.597
Your Current Organism:
Firmicutes bacterium CAG95
NCBI taxonomy Id: 1262988
Other names: F. bacterium CAG:95, Firmicutes bacterium CAG:95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.