STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDF08077.1Putative uncharacterized protein; Product inferred by homology to UniProt. (183 aa)    
Predicted Functional Partners:
rplN
50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.895
CDF08078.1
Adenylate cyclase; Product inferred by homology to UniProt.
     0.868
greA-2
Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.727
CDF07747.1
Pyridine nucleotide-disulfide oxidoreductase; Product inferred by homology to UniProt.
  
  0.671
CDF06829.1
Glyoxalase/bleomycin resistance protein/dioxygenase; Product inferred by homology to UniProt.
  
 
 0.659
CDF08270.1
pP-loop family protein; Product inferred by homology to UniProt; Belongs to the TtcA family.
    
  0.646
CDF07169.1
Putative uncharacterized protein; Product inferred by homology to UniProt; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
  0.645
CDF08398.1
Hydrolase NUDIX family; Product inferred by homology to UniProt.
    
  0.618
CDF07260.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
   
 0.606
CDF08407.1
Aldehyde dehydrogenase; Product inferred by homology to UniProt; Belongs to the aldehyde dehydrogenase family.
  
  0.600
Your Current Organism:
Firmicutes bacterium CAG95
NCBI taxonomy Id: 1262988
Other names: F. bacterium CAG:95, Firmicutes bacterium CAG:95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.