STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmkCytidylate kinase; Product inferred by homology to UniProt. (222 aa)    
Predicted Functional Partners:
der
gTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
 0.984
CDC73950.1
3-phosphoshikimate 1-carboxyvinyltransferase; Product inferred by homology to UniProt.
 
 
 0.942
CDC74218.1
Pseudouridine synthase; Product inferred by homology to UniProt; Belongs to the pseudouridine synthase RsuA family.
 
  
 0.920
CDC73948.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
 
 
 0.884
CDC78006.1
Chorismate mutase; Product inferred by homology to UniProt.
  
 
 0.817
CDC75170.1
Polyprenyl synthetase; Product inferred by homology to UniProt; Belongs to the FPP/GGPP synthase family.
 
 
  0.790
CDC74200.1
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
  
 0.755
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
   
    0.744
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
 
 
 0.741
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
    
 0.719
Your Current Organism:
Firmicutes bacterium CAG272
NCBI taxonomy Id: 1263015
Other names: F. bacterium CAG:272, Firmicutes bacterium CAG:272
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.