STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDE49668.1yihY family protein; Product inferred by homology to UniProt; Belongs to the UPF0761 family. (285 aa)    
Predicted Functional Partners:
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
     
 0.806
CDE49669.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
       0.799
CDE49671.1
Unknown; No significant homology to UniProt.
       0.778
ligA
dNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.680
CDE49673.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
       0.665
CDE49674.1
aTP-dependent DNA helicase PcrA; Product inferred by homology to UniProt.
       0.656
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
 
     0.464
CDE49691.1
dHHA2 domain protein; Product inferred by homology to UniProt.
   
   0.422
gatB
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
   
   0.414
CDE49386.1
Putative serine/threonine-specific protein kinase; Product inferred by homology to UniProt.
     
 0.405
Your Current Organism:
Firmicutes bacterium CAG460
NCBI taxonomy Id: 1263024
Other names: F. bacterium CAG:460, Firmicutes bacterium CAG:460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.