STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDB25527.1Unknown; No significant homology to UniProt. (68 aa)    
Predicted Functional Partners:
lysS
lysine--tRNA ligase; Product inferred by homology to UniProt; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.773
CDB25523.1
Arginine/lysine/ornithine decarboxylases; Product inferred by homology to UniProt.
       0.773
tmk
Thymidylate kinase 1; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.773
CDB25525.1
dNA polymerase III subunit delta; Product inferred by homology to UniProt.
       0.773
CDB25526.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
       0.773
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.661
CDB25528.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.452
CDB25516.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
       0.442
Your Current Organism:
Firmicutes bacterium CAG552
NCBI taxonomy Id: 1263029
Other names: F. bacterium CAG:552, Firmicutes bacterium CAG:552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.