STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_00264.1Probable atp-dependent rna helicase ddx41. (594 aa)    
Predicted Functional Partners:
LCOR_03569.1
Pre-mrna-splicing factor.
    
  0.859
LCOR_08282.1
Peptidyl-prolyl cis-trans isomerase.
   
 0.854
LCOR_07627.1
Pre-mrna splicing factor.
   
 0.769
LCOR_02320.1
Dead deah box helicase.
    
 0.765
LCOR_08719.1
AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.
    
 0.765
LCOR_02065.1
Pwi domain-containing protein.
    
  0.749
LCOR_03378.1
Pre-mrna splicing factor.
    
  0.749
LCOR_01662.1
P-loop containing nucleoside triphosphatehydrolase protein.
   
 0.743
LCOR_05506.1
Atp-dependent rna helicase dhx8.
   
 0.743
LCOR_07160.1
Probable atp-dependent rna helicase dhx34.
   
 0.743
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.