STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_00524.1Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (80 aa)    
Predicted Functional Partners:
LCOR_01506.1
Small nuclear ribonucleoprotein f.
   
 0.999
LCOR_04190.1
Small nuclear ribonucleoprotein Sm D3.
   
 0.999
LCOR_04885.1
Small nuclear ribonucleoprotein G.
   
 0.999
LCOR_06280.1
Small nuclear ribonucleoprotein Sm D2.
   
 0.999
LCOR_09991.1
CID domain-containing protein.
   
 0.999
LCOR_02033.1
F-box domain-containing protein.
   
 0.998
LCOR_11325.1
116 kDa u5 small nuclear ribonucleoproteincomponent-like.
   
 0.998
LCOR_01920.1
U1 small nuclear ribonucleoprotein 70 kDa.
   
 0.997
LCOR_03399.1
U2 small nuclear ribonucleoprotein b.
   
 0.997
LCOR_09480.1
Phd finger-like domain-containing protein 5a.
   
 0.997
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.