STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_00310.1Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (395 aa)    
Predicted Functional Partners:
LCOR_04428.1
Dihydroxy-acid dehydratase.
  
 0.951
LCOR_04429.1
Dihydroxy-acid dehydratase.
  
 0.951
LCOR_04702.1
Dihydroxy-acid dehydratase.
  
 0.951
LCOR_11646.1
Acetolactate synthase.
  
 0.940
LCOR_11272.1
2-hydroxyacyl-lyase 1; Belongs to the TPP enzyme family.
  
 0.918
LCOR_10157.1
Homoserine dehydrogenase.
  
 
 0.900
LCOR_01250.1
Threonine dehydratase.
  
 
 0.892
LCOR_01720.1
Homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 0.891
LCOR_04604.1
Homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 0.891
LCOR_05439.1
2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 0.891
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.