STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_01085.1SPOC domain-containing protein. (341 aa)    
Predicted Functional Partners:
LCOR_02137.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.939
LCOR_03627.1
Sister chromatid cohesion protein.
   
  
 0.887
LCOR_09210.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.826
LCOR_03194.1
Transcription elongation factor.
    
 0.818
LCOR_03400.1
Rna polymerase rpb3 rpb11 dimerization domain-containing protein.
    
  0.817
LCOR_00472.1
Dna-directed rna polymerases and iii subunitrpabc2-like.
    
  0.809
LCOR_03376.1
Dna-directed rna polymerase ii subunit rpb4-like.
    
  0.809
LCOR_04360.1
Dna-directed rna polymerases and iii subunitrpabc5-like.
    
  0.809
LCOR_04747.1
Dna-directed rna polymerase ii subunit rpb7.
    
  0.809
LCOR_05567.1
Rna polymerase ii core subunit.
    
  0.809
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.