LCOR_00803.1 protein (Lichtheimia corymbifera)

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

LCOR_00803.1

Mitochondrial chaperone bcs1. (556 aa)

Predicted Functional Partners:

LCOR_01950.1

0.766

LCOR_00534.1

0.764

LCOR_00477.1

0.764

LCOR_01209.1

0.764

LCOR_10515.1

0.764

LCOR_10516.1

0.764

LCOR_11410.1

0.764

LCOR_08304.1

0.702

LCOR_06512.1

0.700

LCOR_03610.1

0.690

Your Current Organism:

Lichtheimia corymbifera

NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LCOR_00477.1	LCOR_00534.1	A0A068RIB8	A0A068RF15	Prohibitin.	Stomatin family protein.	0.797
LCOR_00477.1	LCOR_00803.1	A0A068RIB8	A0A068RHE8	Prohibitin.	Mitochondrial chaperone bcs1.	0.764
LCOR_00477.1	LCOR_01950.1	A0A068RIB8	A0A068RMP1	Prohibitin.	Prohibitin.	0.997
LCOR_00534.1	LCOR_00477.1	A0A068RF15	A0A068RIB8	Stomatin family protein.	Prohibitin.	0.797
LCOR_00534.1	LCOR_00803.1	A0A068RF15	A0A068RHE8	Stomatin family protein.	Mitochondrial chaperone bcs1.	0.764
LCOR_00534.1	LCOR_01950.1	A0A068RF15	A0A068RMP1	Stomatin family protein.	Prohibitin.	0.789
LCOR_00534.1	LCOR_11410.1	A0A068RF15	A0A068SG89	Stomatin family protein.	Prohibitin.	0.797
LCOR_00803.1	LCOR_00477.1	A0A068RHE8	A0A068RIB8	Mitochondrial chaperone bcs1.	Prohibitin.	0.764
LCOR_00803.1	LCOR_00534.1	A0A068RHE8	A0A068RF15	Mitochondrial chaperone bcs1.	Stomatin family protein.	0.764
LCOR_00803.1	LCOR_01209.1	A0A068RHE8	A0A068RIK4	Mitochondrial chaperone bcs1.	Erythrocyte band 7 integral membrane protein.	0.764
LCOR_00803.1	LCOR_01950.1	A0A068RHE8	A0A068RMP1	Mitochondrial chaperone bcs1.	Prohibitin.	0.766
LCOR_00803.1	LCOR_03610.1	A0A068RHE8	A0A068RT23	Mitochondrial chaperone bcs1.	U3 snornp-associated protein rrp5.	0.690
LCOR_00803.1	LCOR_06512.1	A0A068RHE8	A0A068S0I2	Mitochondrial chaperone bcs1.	30s ribosomal protein s16.	0.700
LCOR_00803.1	LCOR_08304.1	A0A068RHE8	A0A068S4Z1	Mitochondrial chaperone bcs1.	Related to mrpl16-mitochondrial ribosomal largesubunit; Belongs to the universal ribosomal protein uL16 family.	0.702
LCOR_00803.1	LCOR_10515.1	A0A068RHE8	A0A068SBP3	Mitochondrial chaperone bcs1.	Erythrocyte band 7 integral membrane protein.	0.764
LCOR_00803.1	LCOR_10516.1	A0A068RHE8	A0A068SCJ4	Mitochondrial chaperone bcs1.	Stomatin family protein.	0.764
LCOR_00803.1	LCOR_11410.1	A0A068RHE8	A0A068SG89	Mitochondrial chaperone bcs1.	Prohibitin.	0.764
LCOR_01209.1	LCOR_00803.1	A0A068RIK4	A0A068RHE8	Erythrocyte band 7 integral membrane protein.	Mitochondrial chaperone bcs1.	0.764
LCOR_01950.1	LCOR_00477.1	A0A068RMP1	A0A068RIB8	Prohibitin.	Prohibitin.	0.997
LCOR_01950.1	LCOR_00534.1	A0A068RMP1	A0A068RF15	Prohibitin.	Stomatin family protein.	0.789

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

53

average node degree:

9.64

avg. local clustering coefficient:

0.968

expected number of edges:

34

PPI enrichment p-value:

0.00124

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

10 of 102

1.5

2.9

6.89e-12

GO:0044271

Cellular nitrogen compound biosynthetic process

11 of 303

1.07

1.46

3.07e-10

GO:1901566

Organonitrogen compound biosynthetic process

11 of 318

1.05

1.4

4.53e-10

GO:0043933

Protein-containing complex organization

2 of 14

1.67

0.69

0.0432

GO:0044238

Primary metabolic process

11 of 1056

0.53

0.46

8.50e-05

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

9 of 51

1.76

3.92

1.77e-12

GO:0019843

rRNA binding

6 of 40

1.69

2.54

2.78e-07

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

9 of 56

1.72

3.85

6.92e-13

GO:0044391

Ribosomal subunit

4 of 13

2.0

2.68

2.01e-06

GO:0015935

Small ribosomal subunit

3 of 6

2.21

2.36

2.40e-05

GO:0005622

Intracellular anatomical structure

11 of 1155

0.49

0.43

5.02e-05

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:146

Ribosome, and Translational elongation

9 of 68

1.63

3.41

3.60e-12

CL:134

Ribosome, and Ribonucleoside triphosphate biosynthetic process

11 of 104

1.54

3.32

1.80e-14

CL:153

Ribosome

7 of 42

1.73

3.24

1.09e-09

CL:149

Ribosome, and RNA polymerase

8 of 59

1.64

3.2

1.00e-10

CL:157

Structural constituent of ribosome

5 of 29

1.75

2.44

1.30e-06

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

9 of 55

1.73

3.88

6.52e-13

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

6 of 37

1.72

2.6

2.63e-07

GOCC:0044391

Ribosomal subunit

4 of 16

1.91

2.24

1.62e-05

GOCC:0015934

Large ribosomal subunit

2 of 7

1.97

1.05

0.0097

GOCC:0043229

Intracellular organelle

9 of 325

0.95

1.02

3.20e-06

GOCC:0015935

Small ribosomal subunit

2 of 9

1.86

0.97

0.0132

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

9 of 55

1.73

3.84

1.04e-12

KW-0699

rRNA-binding

6 of 38

1.71

2.75

6.62e-08

KW-0820

tRNA-binding

2 of 14

1.67

0.72

0.0374

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