STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_01592.1Ribosome biogenesis protein sqt1. (410 aa)    
Predicted Functional Partners:
LCOR_04790.1
Glutamate-rich wd repeat containing.
   
  
 0.921
LCOR_03730.1
60s ribosomal protein l10.
    
 
 0.871
LCOR_05184.1
60s ribosomal protein l10.
    
 
 0.871
LCOR_05758.1
60s ribosomal protein l10.
    
 
 0.871
LCOR_11395.1
60s ribosomal protein l10.
    
 
 0.871
LCOR_10875.1
60s ribosomal protein l10.
    
 
 0.871
LCOR_05484.1
Nucleotide exchange factors-like protein.
    
 
 0.785
LCOR_08304.1
Related to mrpl16-mitochondrial ribosomal largesubunit; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.785
LCOR_09370.1
60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.
   
  
 0.772
LCOR_00362.1
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
  
 0.766
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.