STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_01556.1RanBP2-type domain-containing protein. (247 aa)    
Predicted Functional Partners:
LCOR_06847.1
Transcription initiation factor tfiid subunit12.
   
  0.979
LCOR_02074.1
Transcription initiation factor tfiid subunit11.
    
  0.971
LCOR_04259.1
TAF4 domain-containing protein.
   
  0.926
LCOR_07335.1
Transcription initiation factor tfiid subunit 5.
    
 0.857
LCOR_08467.1
Ring finger and spry domain-containing protein1.
   
 0.807
LCOR_01920.1
U1 small nuclear ribonucleoprotein 70 kDa.
   
 0.768
LCOR_05277.1
Atypical taf1 protein kinase.
     
 0.757
LCOR_07295.1
Ph domain-containing protein.
   
 0.746
LCOR_08666.1
CSP domain-containing protein.
   
 0.746
LCOR_00863.1
Transcription initiation factor tfiid 55 kdasubunit.
    
  0.745
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.