STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_02082.1Yeats domain-containing protein 2. (806 aa)    
Predicted Functional Partners:
LCOR_09110.1
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.945
LCOR_04936.1
Histone acetylase complex subunit; Belongs to the PI3/PI4-kinase family.
   
 0.920
LCOR_04141.1
Uncharacterized protein.
    
 0.911
LCOR_07821.1
Dna methyltransferase 1 associated protein 1.
   
 0.903
LCOR_08901.1
Dna methyltransferase 1-associated protein 1-like.
   
 0.903
LCOR_01509.1
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.901
LCOR_08346.1
Uncharacterized protein.
    
 0.881
LCOR_03973.1
Gcn5p.
    
 
 0.879
LCOR_03400.1
Rna polymerase rpb3 rpb11 dimerization domain-containing protein.
   
 0.877
LCOR_05567.1
Rna polymerase ii core subunit.
   
 0.874
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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