STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_02285.1Aaa family cdc48 subfamily; Belongs to the AAA ATPase family. (510 aa)    
Predicted Functional Partners:
LCOR_04398.1
Nsfl1 cofactor p47.
   
 0.958
LCOR_06207.1
Endoplasmic reticulum and nuclear membraneproteinc.
   
 0.956
LCOR_11065.1
Ubiquitin fusion degradation protein 1.
    
 0.955
LCOR_01705.1
Ubx domain protein.
    
 0.950
LCOR_10369.1
UBX domain-containing protein.
    
 0.947
LCOR_08495.1
Otu-domain-containing protein.
   
 0.946
LCOR_07883.1
Uncharacterized protein.
    
 0.942
LCOR_04264.1
Misfolded glycoproteins degradation protein.
    
 0.935
LCOR_11253.1
Proteasome subunit beta.
   
 0.920
LCOR_02695.1
26s proteasome non-atpase regulatory subunit 4-like.
   
 0.894
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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