STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_02475.1Nuclear lim interactor-interacting protein. (316 aa)    
Predicted Functional Partners:
LCOR_09110.1
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.875
LCOR_08669.1
Uncharacterized protein.
    
 0.852
LCOR_07477.1
Uncharacterized protein.
    
 0.833
LCOR_00965.1
Lns2-domain-containing protein.
    
 0.829
LCOR_03675.1
Lns2-domain-containing protein.
    
 0.829
LCOR_03376.1
Dna-directed rna polymerase ii subunit rpb4-like.
    
 0.814
LCOR_01606.1
Uncharacterized protein.
    
 0.809
LCOR_03400.1
Rna polymerase rpb3 rpb11 dimerization domain-containing protein.
    
 0.809
LCOR_04747.1
Dna-directed rna polymerase ii subunit rpb7.
    
 0.809
LCOR_07547.1
Dna-directed rna polymerases i and iii subunitrpac1.
    
 0.809
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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