STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_03327.1HNHc domain-containing protein. (530 aa)    
Predicted Functional Partners:
LCOR_01756.1
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.754
LCOR_01872.1
Exosome complex exonuclease rrp40.
    
 
 0.751
LCOR_08211.1
Exosome complex component rrp46.
   
   0.515
LCOR_09665.1
Ribosomal protein s5 domain 2-like protein.
   
   0.515
LCOR_11456.1
Exosome component 4.
   
   0.515
LCOR_05742.1
25S rRNA adenine-N(1) methyltransferase; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of an adenine present in helix 65 in 25S rRNA; Belongs to the BMT2 family.
  
  
 0.494
LCOR_00872.1
Uncharacterized protein.
   
 
 0.488
LCOR_05228.1
Uncharacterized protein.
   
 
 0.488
LCOR_09388.1
Arm repeat-containing protein.
   
 
 0.488
LCOR_06381.1
Trna-specific 2-thiouridylase.
  
  
 0.487
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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