STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_02521.1ANK_REP_REGION domain-containing protein. (257 aa)    
Predicted Functional Partners:
LCOR_11035.1
Wd40 repeat-like protein; Belongs to the WD repeat SEC13 family.
    
 0.985
LCOR_11226.1
Arf sar; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.979
LCOR_02104.1
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.970
LCOR_05612.1
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.970
LCOR_00955.1
Protein transporter sec24.
   
 0.928
LCOR_04114.1
Cpii coat sec24 protein.
   
 0.928
LCOR_10001.1
Protein transporter sec24.
   
 0.928
LCOR_01700.1
Protein transporter sec24-like cef protein.
   
 0.895
LCOR_07749.1
Protein transport protein sec24c.
   
 0.895
LCOR_08662.1
Supernatant protein factor c-terminal domain-containing protein.
    
 0.790
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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