LCOR_03627.1 protein (Lichtheimia corymbifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LCOR_03627.1

Sister chromatid cohesion protein. (1616 aa)

Predicted Functional Partners:

LCOR_01502.1

0.998

LCOR_10355.1

0.997

LCOR_10981.1

0.997

LCOR_00131.1

0.975

LCOR_05754.1

0.933

LCOR_03288.1

0.905

LCOR_01085.1

0.887

LCOR_10806.1

0.887

LCOR_10492.1

0.887

LCOR_05065.1

0.865

Your Current Organism:

Lichtheimia corymbifera

NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LCOR_00131.1	LCOR_01502.1	A0A068RED2	A0A068RHU5	Cohesin-associated protein pds5.	Structural maintenance of chromosomes protein.	0.993
LCOR_00131.1	LCOR_03288.1	A0A068RED2	A0A068RRY6	Cohesin-associated protein pds5.	Structural maintenance of chromosomes protein.	0.927
LCOR_00131.1	LCOR_03627.1	A0A068RED2	A0A068RT39	Cohesin-associated protein pds5.	Sister chromatid cohesion protein.	0.975
LCOR_00131.1	LCOR_05065.1	A0A068RED2	A0A068RXN5	Cohesin-associated protein pds5.	P-loop containing nucleoside triphosphatehydrolase protein.	0.936
LCOR_00131.1	LCOR_05754.1	A0A068RED2	A0A068RY67	Cohesin-associated protein pds5.	P-loop containing nucleoside triphosphatehydrolase protein.	0.940
LCOR_00131.1	LCOR_10355.1	A0A068RED2	A0A068SB14	Cohesin-associated protein pds5.	Structural maintenance of chromosomes protein.	0.995
LCOR_00131.1	LCOR_10492.1	A0A068RED2	A0A068SEK3	Cohesin-associated protein pds5.	Structural maintenance of chromosomes protein.	0.901
LCOR_00131.1	LCOR_10981.1	A0A068RED2	A0A068SED6	Cohesin-associated protein pds5.	Related to double-strand-break repair proteinrad21.	0.998
LCOR_01085.1	LCOR_03627.1	A0A068RGN4	A0A068RT39	SPOC domain-containing protein.	Sister chromatid cohesion protein.	0.887
LCOR_01502.1	LCOR_00131.1	A0A068RHU5	A0A068RED2	Structural maintenance of chromosomes protein.	Cohesin-associated protein pds5.	0.993
LCOR_01502.1	LCOR_03288.1	A0A068RHU5	A0A068RRY6	Structural maintenance of chromosomes protein.	Structural maintenance of chromosomes protein.	0.800
LCOR_01502.1	LCOR_03627.1	A0A068RHU5	A0A068RT39	Structural maintenance of chromosomes protein.	Sister chromatid cohesion protein.	0.998
LCOR_01502.1	LCOR_05065.1	A0A068RHU5	A0A068RXN5	Structural maintenance of chromosomes protein.	P-loop containing nucleoside triphosphatehydrolase protein.	0.951
LCOR_01502.1	LCOR_05754.1	A0A068RHU5	A0A068RY67	Structural maintenance of chromosomes protein.	P-loop containing nucleoside triphosphatehydrolase protein.	0.899
LCOR_01502.1	LCOR_10355.1	A0A068RHU5	A0A068SB14	Structural maintenance of chromosomes protein.	Structural maintenance of chromosomes protein.	0.999
LCOR_01502.1	LCOR_10492.1	A0A068RHU5	A0A068SEK3	Structural maintenance of chromosomes protein.	Structural maintenance of chromosomes protein.	0.881
LCOR_01502.1	LCOR_10981.1	A0A068RHU5	A0A068SED6	Structural maintenance of chromosomes protein.	Related to double-strand-break repair proteinrad21.	0.999
LCOR_03288.1	LCOR_00131.1	A0A068RRY6	A0A068RED2	Structural maintenance of chromosomes protein.	Cohesin-associated protein pds5.	0.927
LCOR_03288.1	LCOR_01502.1	A0A068RRY6	A0A068RHU5	Structural maintenance of chromosomes protein.	Structural maintenance of chromosomes protein.	0.800
LCOR_03288.1	LCOR_03627.1	A0A068RRY6	A0A068RT39	Structural maintenance of chromosomes protein.	Sister chromatid cohesion protein.	0.905

page 1 of 4

Network Stats

number of nodes:

2

number of edges:

1

average node degree:

1

avg. local clustering coefficient:

1

expected number of edges:

1

PPI enrichment p-value:

0.5

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0098703

Calcium ion import across plasma membrane

2 of 4

2.74

0.77

0.0412

GO:0051568

Histone H3-K4 methylation

2 of 11

2.3

0.76

0.0412

GO:0051028

mRNA transport

3 of 59

1.75

0.72

0.0412

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0017056

Structural constituent of nuclear pore

3 of 18

2.26

1.55

0.0012

GO:0008331

High voltage-gated calcium channel activity

2 of 2

3.04

1.35

0.0037

GO:0005198

Structural molecule activity

4 of 231

1.28

0.76

0.0166

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005891

Voltage-gated calcium channel complex

2 of 2

3.04

1.34

0.0038

GO:0048188

Set1C/COMPASS complex

2 of 8

2.44

1.26

0.0047

GO:0005643

Nuclear pore

3 of 38

1.94

1.24

0.0038

GO:0031965

Nuclear membrane

3 of 56

1.77

1.16

0.0044

GO:0140513

Nuclear protein-containing complex

5 of 605

0.96

0.65

0.0096

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1296

Sec13/Seh1 family, and mRNA transport

3 of 5

2.82

2.28

6.70e-05

CL:443

Set1C/COMPASS complex

2 of 5

2.64

1.33

0.0038

CL:2723

EF-hand domain, and Contractile ring

2 of 22

2.0

0.81

0.0294

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-4085377

SUMOylation of SUMOylation proteins

3 of 28

2.07

1.37

0.0023

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005891

Voltage-gated calcium channel complex

2 of 3

2.87

1.18

0.0074

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00520

Ion transport protein

2 of 3

2.87

1.15

0.0082

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR027359

Voltage-dependent channel domain superfamily

2 of 2

3.04

1.04

0.0136

IPR005821

Ion transport domain

2 of 3

2.87

1.03

0.0136

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (16%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About