STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_03832.1Ubiquitin-protein ligase sel1. (871 aa)    
Predicted Functional Partners:
LCOR_04264.1
Misfolded glycoproteins degradation protein.
   
 0.996
LCOR_07805.1
Zinc finger protein.
   
 0.996
LCOR_01064.1
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.995
LCOR_08324.1
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.990
LCOR_03252.1
Aaa atpase.
   
 0.989
LCOR_02710.1
Copii-coated vesicle protein.
    
   0.954
LCOR_04814.1
Uncharacterized protein.
   
 0.860
LCOR_04720.1
E3 ubiquitin-protein ligase amfr-like.
   
 0.851
LCOR_04374.1
Aaa family cdc48 subfamily.
   
 0.823
LCOR_11039.1
Spermatogenesis-associated protein 5 isoform 2.
   
 0.823
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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