STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_04530.1Uncharacterized protein. (222 aa)    
Predicted Functional Partners:
LCOR_03016.1
Uncharacterized protein.
    
 0.887
LCOR_00472.1
Dna-directed rna polymerases and iii subunitrpabc2-like.
    
 0.854
LCOR_03400.1
Rna polymerase rpb3 rpb11 dimerization domain-containing protein.
    
 0.854
LCOR_03376.1
Dna-directed rna polymerase ii subunit rpb4-like.
    
 0.854
LCOR_04360.1
Dna-directed rna polymerases and iii subunitrpabc5-like.
    
 0.854
LCOR_09210.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.854
LCOR_05567.1
Rna polymerase ii core subunit.
    
 0.853
LCOR_06232.1
Rna polymerase i.
    
 0.853
LCOR_07659.1
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.850
LCOR_01338.1
Transcription factor tfiib.
    
 0.847
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
Server load: low (20%) [HD]