LCOR_04623.1 protein (Lichtheimia corymbifera)

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second shell of interactors

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a 3D structure is known or predicted

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

LCOR_04623.1

Quinone oxidoreductase. (331 aa)

Predicted Functional Partners:

LCOR_07952.1

0.817

LCOR_05303.1

0.767

LCOR_00975.1

0.747

LCOR_01101.1

0.747

LCOR_01159.1

0.747

LCOR_07347.1

0.729

LCOR_04907.1

0.691

LCOR_03710.1

0.690

LCOR_00257.1

0.669

LCOR_02799.1

0.661

Your Current Organism:

Lichtheimia corymbifera

NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LCOR_00257.1	LCOR_04623.1	A0A068RFR5	A0A068RUE9	Deoxyribose-phosphate aldolase.	Quinone oxidoreductase.	0.669
LCOR_00975.1	LCOR_03710.1	A0A068RGW8	A0A068RPU3	Uncharacterized protein.	Serine palmitoyltransferase.	0.537
LCOR_00975.1	LCOR_04623.1	A0A068RGW8	A0A068RUE9	Uncharacterized protein.	Quinone oxidoreductase.	0.747
LCOR_00975.1	LCOR_04907.1	A0A068RGW8	A0A068RU94	Uncharacterized protein.	Serine palmitoyltransferase 2.	0.537
LCOR_00975.1	LCOR_07347.1	A0A068RGW8	A0A068S1X9	Uncharacterized protein.	Arp protein.	0.796
LCOR_01101.1	LCOR_03710.1	A0A068RI00	A0A068RPU3	Uncharacterized protein.	Serine palmitoyltransferase.	0.537
LCOR_01101.1	LCOR_04623.1	A0A068RI00	A0A068RUE9	Uncharacterized protein.	Quinone oxidoreductase.	0.747
LCOR_01101.1	LCOR_04907.1	A0A068RI00	A0A068RU94	Uncharacterized protein.	Serine palmitoyltransferase 2.	0.537
LCOR_01101.1	LCOR_07347.1	A0A068RI00	A0A068S1X9	Uncharacterized protein.	Arp protein.	0.796
LCOR_01159.1	LCOR_03710.1	A0A068RKB1	A0A068RPU3	Uncharacterized protein.	Serine palmitoyltransferase.	0.537
LCOR_01159.1	LCOR_04623.1	A0A068RKB1	A0A068RUE9	Uncharacterized protein.	Quinone oxidoreductase.	0.747
LCOR_01159.1	LCOR_04907.1	A0A068RKB1	A0A068RU94	Uncharacterized protein.	Serine palmitoyltransferase 2.	0.537
LCOR_01159.1	LCOR_07347.1	A0A068RKB1	A0A068S1X9	Uncharacterized protein.	Arp protein.	0.796
LCOR_02799.1	LCOR_04623.1	A0A068RN51	A0A068RUE9	4-hydroxyphenylpyruvate dioxygenase.	Quinone oxidoreductase.	0.661
LCOR_03710.1	LCOR_00975.1	A0A068RPU3	A0A068RGW8	Serine palmitoyltransferase.	Uncharacterized protein.	0.537
LCOR_03710.1	LCOR_01101.1	A0A068RPU3	A0A068RI00	Serine palmitoyltransferase.	Uncharacterized protein.	0.537
LCOR_03710.1	LCOR_01159.1	A0A068RPU3	A0A068RKB1	Serine palmitoyltransferase.	Uncharacterized protein.	0.537
LCOR_03710.1	LCOR_04623.1	A0A068RPU3	A0A068RUE9	Serine palmitoyltransferase.	Quinone oxidoreductase.	0.690
LCOR_04623.1	LCOR_00257.1	A0A068RUE9	A0A068RFR5	Quinone oxidoreductase.	Deoxyribose-phosphate aldolase.	0.669
LCOR_04623.1	LCOR_00975.1	A0A068RUE9	A0A068RGW8	Quinone oxidoreductase.	Uncharacterized protein.	0.747

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

30

average node degree:

5.45

avg. local clustering coefficient:

0.801

expected number of edges:

15

PPI enrichment p-value:

0.000317

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006351

Transcription, DNA-templated

5 of 25

1.89

2.34

7.95e-06

GO:0019336

Phenol-containing compound catabolic process

2 of 5

2.19

0.94

0.0181

GO:0006725

Cellular aromatic compound metabolic process

10 of 657

0.77

0.72

2.90e-05

GO:1901360

Organic cyclic compound metabolic process

10 of 697

0.74

0.68

4.13e-05

GO:2000142

Regulation of DNA-templated transcription, initiation

2 of 14

1.74

0.68

0.0489

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003899

DNA-directed 5-3 RNA polymerase activity

3 of 7

2.22

1.54

0.0012

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000428

DNA-directed RNA polymerase complex

3 of 7

2.22

1.89

0.00023

GO:0005737

Cytoplasm

9 of 1463

0.37

0.27

0.0392

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:987

Mixed, incl. Fumarylacetoacetase-like, C-terminal, and Glutathione S-transferase, N-terminal domain

4 of 5

2.49

2.93

2.79e-06

CL:1710

RNA polymerase

3 of 5

2.36

1.94

0.00022

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03020

RNA polymerase

3 of 4

2.46

2.38

3.32e-05

map00350

Tyrosine metabolism

4 of 20

1.89

2.1

3.32e-05

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0000428

DNA-directed RNA polymerase complex

5 of 38

1.7

2.09

1.16e-05

GOCC:0005739

Mitochondrion

3 of 59

1.29

0.74

0.0201

GOCC:0005622

Intracellular

11 of 1640

0.41

0.34

0.0019

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0240

DNA-directed RNA polymerase

3 of 8

2.16

1.71

0.00051

KW-0548

Nucleotidyltransferase

3 of 38

1.48

0.91

0.0108

KW-0731

Sigma factor

2 of 12

1.81

0.8

0.0284

KW-0223

Dioxygenase

2 of 11

1.85

0.8

0.0284

KW-0804

Transcription

5 of 199

0.99

0.66

0.0108

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF01557

Fumarylacetoacetate (FAA) hydrolase family

2 of 2

2.59

0.9

0.0235

PF02798

Glutathione S-transferase, N-terminal domain

2 of 3

2.41

0.89

0.0235

PF13410

Glutathione S-transferase, C-terminal domain

2 of 4

2.28

0.88

0.0235

PF04545

Sigma-70, region 4

2 of 8

1.98

0.73

0.0437

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