STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_04778.1Kh domain rna-binding protein. (393 aa)    
Predicted Functional Partners:
LCOR_09833.1
Nuclear cap-binding protein subunit 2.
    
 0.831
LCOR_03854.1
Pre-mrna-processing-splicing factor 8.
   
   0.826
LCOR_09424.1
Transformer-2 protein homolog beta-like.
   
 0.824
LCOR_02250.1
Nuclear cap-binding protein subunit 1-like.
    
 0.820
LCOR_01920.1
U1 small nuclear ribonucleoprotein 70 kDa.
   
 0.740
LCOR_08467.1
Ring finger and spry domain-containing protein1.
   
  0.740
LCOR_00435.1
Translation initiation factor 4b.
   
 0.731
LCOR_06765.1
Uncharacterized protein.
   
 0.726
LCOR_01672.1
Alternative splicing factor asf.
   
 0.723
LCOR_04503.1
Alternative splicing factor srp55 b52.
   
 0.723
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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