LCOR_04854.1 protein (Lichtheimia corymbifera)

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second shell of interactors

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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LCOR_04854.1

U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (790 aa)

Predicted Functional Partners:

LCOR_07929.1

0.997

LCOR_00287.1

0.995

LCOR_09890.1

0.994

LCOR_02540.1

0.993

LCOR_03610.1

0.993

LCOR_09746.1

0.992

LCOR_07728.1

0.989

LCOR_02808.1

0.987

LCOR_03781.1

0.987

LCOR_01318.1

0.986

Your Current Organism:

Lichtheimia corymbifera

NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LCOR_00287.1	LCOR_01318.1	A0A068RFQ6	A0A068S094	Ribosomal rna processing protein 36 homolog.	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family.	0.754
LCOR_00287.1	LCOR_02540.1	A0A068RFQ6	A0A068RL02	Ribosomal rna processing protein 36 homolog.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.797
LCOR_00287.1	LCOR_02808.1	A0A068RFQ6	A0A068RN59	Ribosomal rna processing protein 36 homolog.	Fcf1-domain-containing protein.	0.834
LCOR_00287.1	LCOR_03610.1	A0A068RFQ6	A0A068RT23	Ribosomal rna processing protein 36 homolog.	U3 snornp-associated protein rrp5.	0.857
LCOR_00287.1	LCOR_03781.1	A0A068RFQ6	A0A068RTI8	Ribosomal rna processing protein 36 homolog.	Ribosome biogenesis protein.	0.864
LCOR_00287.1	LCOR_04854.1	A0A068RFQ6	A0A068RV10	Ribosomal rna processing protein 36 homolog.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.995
LCOR_00287.1	LCOR_07728.1	A0A068RFQ6	A0A068S364	Ribosomal rna processing protein 36 homolog.	Probable atp-dependent rna helicase ddx49; Belongs to the DEAD box helicase family.	0.880
LCOR_00287.1	LCOR_07929.1	A0A068RFQ6	A0A068S505	Ribosomal rna processing protein 36 homolog.	Nop14-like protein.	0.894
LCOR_00287.1	LCOR_09746.1	A0A068RFQ6	A0A068S9A5	Ribosomal rna processing protein 36 homolog.	U3 snornp-associated protein utp7.	0.793
LCOR_00287.1	LCOR_09890.1	A0A068RFQ6	A0A068S9N9	Ribosomal rna processing protein 36 homolog.	Utp21-domain-containing protein.	0.739
LCOR_01318.1	LCOR_00287.1	A0A068S094	A0A068RFQ6	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family.	Ribosomal rna processing protein 36 homolog.	0.754
LCOR_01318.1	LCOR_02540.1	A0A068S094	A0A068RL02	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.987
LCOR_01318.1	LCOR_02808.1	A0A068S094	A0A068RN59	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family.	Fcf1-domain-containing protein.	0.999
LCOR_01318.1	LCOR_03610.1	A0A068S094	A0A068RT23	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family.	U3 snornp-associated protein rrp5.	0.999
LCOR_01318.1	LCOR_03781.1	A0A068S094	A0A068RTI8	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family.	Ribosome biogenesis protein.	0.999
LCOR_01318.1	LCOR_04854.1	A0A068S094	A0A068RV10	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.986
LCOR_01318.1	LCOR_07728.1	A0A068S094	A0A068S364	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family.	Probable atp-dependent rna helicase ddx49; Belongs to the DEAD box helicase family.	0.979
LCOR_01318.1	LCOR_07929.1	A0A068S094	A0A068S505	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family.	Nop14-like protein.	0.998
LCOR_01318.1	LCOR_09746.1	A0A068S094	A0A068S9A5	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family.	U3 snornp-associated protein utp7.	0.998
LCOR_01318.1	LCOR_09890.1	A0A068S094	A0A068S9N9	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family.	Utp21-domain-containing protein.	0.984

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Network Stats

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Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0031929

TOR signaling

4 of 8

2.77

3.41

4.77e-07

GO:0031329

Regulation of cellular catabolic process

5 of 74

1.9

2.4

5.77e-06

GO:0071230

Cellular response to amino acid stimulus

3 of 8

2.64

2.27

6.39e-05

GO:0071038

Nuclear polyadenylation-dependent tRNA catabolic process

3 of 12

2.47

2.16

8.80e-05

GO:0071035

Nuclear polyadenylation-dependent rRNA catabolic process

3 of 12

2.47

2.16

8.80e-05

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0038201

TOR complex

4 of 7

2.82

3.84

7.43e-08

GO:0031932

TORC2 complex

3 of 6

2.77

2.71

1.01e-05

GO:0000176

Nuclear exosome (RNase complex)

3 of 12

2.47

2.33

4.11e-05

GO:1990131

Gtr1-Gtr2 GTPase complex

2 of 2

3.07

1.88

0.00039

GO:0031931

TORC1 complex

2 of 3

2.89

1.78

0.00058

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4006

Mixed, incl. TOR complex, and Gtr1/RagA G protein

7 of 12

2.83

7.61

2.52e-15

CL:4008

Mixed, incl. Gtr1/RagA G protein, and snRNA catabolic process

4 of 6

2.89

4.31

1.06e-08

CL:4020

TORC2 complex

3 of 5

2.85

2.93

4.14e-06

CL:6567

Nuclear polyadenylation-dependent ncRNA catabolic process

2 of 11

2.33

1.15

0.0075

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03018

RNA degradation

3 of 99

1.55

0.92

0.0113

map04136

Autophagy - other

2 of 28

1.92

0.88

0.0211

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-389357

CD28 dependent PI3K/Akt signaling

3 of 6

2.77

2.49

2.66e-05

MAP-6806003

Regulation of TP53 Expression and Degradation

3 of 9

2.59

2.46

2.66e-05

MAP-6804757

Regulation of TP53 Degradation

3 of 9

2.59

2.46

2.66e-05

MAP-5218920

VEGFR2 mediated vascular permeability

3 of 11

2.5

2.44

2.66e-05

MAP-389356

CD28 co-stimulation

3 of 11

2.5

2.44

2.66e-05

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0038201

TOR complex

4 of 8

2.77

3.69

1.36e-07

GOCC:0000178

Exosome (RNase complex)

3 of 13

2.43

2.17

8.24e-05

GOCC:0031931

TORC1 complex

2 of 4

2.77

1.5

0.0019

GOCC:0070209

ASTRA complex

2 of 5

2.67

1.46

0.0022

GOCC:0031932

TORC2 complex

2 of 6

2.59

1.42

0.0025

(more ...)

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR006762

Gtr1/RagA G protein

2 of 2

3.07

1.09

0.0109

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