STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_05275.1EF-hand domain-containing protein. (146 aa)    
Predicted Functional Partners:
LCOR_02512.1
Calpain-7; Belongs to the peptidase C2 family.
   
 0.888
LCOR_02521.1
ANK_REP_REGION domain-containing protein.
    
 
 0.589
LCOR_05491.1
SRA1 domain-containing protein.
    
 
 0.589
LCOR_02138.1
Vacuolar protein-sorting protein bro1.
    
 
 0.579
LCOR_03322.1
Ph signal transduction protein.
    
 
 0.579
LCOR_05219.1
Ph signal transduction protein.
    
 
 0.579
LCOR_07161.1
Vacuolar protein-sorting protein bro1.
    
 
 0.579
LCOR_04831.1
Endosomal sorting complex protein.
   
 
 0.526
LCOR_05274.1
Uncharacterized protein.
 
     0.490
LCOR_11618.1
Uncharacterized protein.
   
    0.465
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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