STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_05556.1Uncharacterized protein. (309 aa)    
Predicted Functional Partners:
LCOR_07263.1
Uncharacterized protein.
    
 0.823
LCOR_00791.1
Thiamin pyrophosphokinase-related protein.
    
  0.473
LCOR_05596.1
Cyclin-like protein; Belongs to the cyclin family.
     
 0.467
LCOR_01694.1
Uncharacterized protein.
    
 
 0.466
LCOR_07010.1
Upf0536 protein c12orf66 homolog.
    
 
 0.453
LCOR_05361.1
Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family.
    
   0.440
LCOR_00237.1
Wd repeat protein.
    
   0.418
LCOR_03897.1
Pre-mrna-splicing factor isy1 homolog.
    
   0.418
LCOR_11087.1
Mps one binder kinase activator-like 3.
    
   0.418
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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