STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_05902.1Uncharacterized protein. (637 aa)    
Predicted Functional Partners:
LCOR_08697.1
Dna polymerase small subunit.
    
 0.809
LCOR_05830.1
Uncharacterized protein.
    
 0.796
LCOR_03017.1
Crossover junction endonuclease mus81.
    
 0.794
LCOR_06584.1
DNA polymerase.
   
 0.791
LCOR_00524.1
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.769
LCOR_01506.1
Small nuclear ribonucleoprotein f.
    
  0.761
LCOR_05627.1
Probable atp-dependent rna helicase ddx20; Belongs to the DEAD box helicase family.
   
 0.761
LCOR_03896.1
Uncharacterized protein.
   
 0.736
LCOR_00879.1
Mus38-like protein.
    
 0.728
LCOR_06280.1
Small nuclear ribonucleoprotein Sm D2.
    
 0.728
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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