STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_05501.1L-fucose. (459 aa)    
Predicted Functional Partners:
LCOR_05466.1
Glycosyl family 43; Belongs to the glycosyl hydrolase 43 family.
   
 0.795
LCOR_07810.1
Wd40 repeat-like protein.
   
 0.764
LCOR_06897.1
Uncharacterized conserved protein.
    
 0.746
LCOR_03258.1
Glycoside hydrolase family 28 protein; Belongs to the glycosyl hydrolase 28 family.
    
 0.695
LCOR_04545.1
Glycoside hydrolase family 28 protein.
    
 0.695
LCOR_04674.1
Extracellular exo-polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
    
 0.695
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.684
LCOR_10082.1
Myosin type ii heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.631
LCOR_04029.1
Mage family protein.
    
 0.625
LCOR_03694.1
Aaa family atpase grc3.
    
  0.621
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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