LCOR_06608.1 protein (Lichtheimia corymbifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LCOR_06608.1

Uncharacterized protein. (393 aa)

Predicted Functional Partners:

LCOR_07952.1

0.753

LCOR_07341.1

0.696

LCOR_11575.1

0.661

LCOR_12184.1

0.659

LCOR_05181.1

0.655

LCOR_08935.1

0.655

LCOR_03256.1

0.652

LCOR_06512.1

0.650

LCOR_01400.1

0.649

LCOR_11867.1

0.647

Your Current Organism:

Lichtheimia corymbifera

NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LCOR_01400.1	LCOR_03256.1	A0A068RJ48	A0A068RNY0	S15 ns1 rna-binding domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Mitochondrial 37s ribosomal protein mrp4.	0.999
LCOR_01400.1	LCOR_05181.1	A0A068RJ48	A0A068RVX9	S15 ns1 rna-binding domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.999
LCOR_01400.1	LCOR_06512.1	A0A068RJ48	A0A068S0I2	S15 ns1 rna-binding domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	30s ribosomal protein s16.	0.999
LCOR_01400.1	LCOR_06608.1	A0A068RJ48	A0A068S0T9	S15 ns1 rna-binding domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.649
LCOR_01400.1	LCOR_11575.1	A0A068RJ48	A0A068SHL6	S15 ns1 rna-binding domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	NDK domain-containing protein.	0.986
LCOR_01400.1	LCOR_11867.1	A0A068RJ48	A0A068SIC0	S15 ns1 rna-binding domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family.	0.999
LCOR_03256.1	LCOR_01400.1	A0A068RNY0	A0A068RJ48	Mitochondrial 37s ribosomal protein mrp4.	S15 ns1 rna-binding domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999
LCOR_03256.1	LCOR_05181.1	A0A068RNY0	A0A068RVX9	Mitochondrial 37s ribosomal protein mrp4.	Uncharacterized protein.	0.999
LCOR_03256.1	LCOR_06512.1	A0A068RNY0	A0A068S0I2	Mitochondrial 37s ribosomal protein mrp4.	30s ribosomal protein s16.	0.999
LCOR_03256.1	LCOR_06608.1	A0A068RNY0	A0A068S0T9	Mitochondrial 37s ribosomal protein mrp4.	Uncharacterized protein.	0.652
LCOR_03256.1	LCOR_07341.1	A0A068RNY0	A0A068S1K9	Mitochondrial 37s ribosomal protein mrp4.	Uncharacterized protein.	0.568
LCOR_03256.1	LCOR_11575.1	A0A068RNY0	A0A068SHL6	Mitochondrial 37s ribosomal protein mrp4.	NDK domain-containing protein.	0.979
LCOR_03256.1	LCOR_11867.1	A0A068RNY0	A0A068SIC0	Mitochondrial 37s ribosomal protein mrp4.	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family.	0.999
LCOR_05181.1	LCOR_01400.1	A0A068RVX9	A0A068RJ48	Uncharacterized protein.	S15 ns1 rna-binding domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999
LCOR_05181.1	LCOR_03256.1	A0A068RVX9	A0A068RNY0	Uncharacterized protein.	Mitochondrial 37s ribosomal protein mrp4.	0.999
LCOR_05181.1	LCOR_06512.1	A0A068RVX9	A0A068S0I2	Uncharacterized protein.	30s ribosomal protein s16.	0.999
LCOR_05181.1	LCOR_06608.1	A0A068RVX9	A0A068S0T9	Uncharacterized protein.	Uncharacterized protein.	0.655
LCOR_05181.1	LCOR_11575.1	A0A068RVX9	A0A068SHL6	Uncharacterized protein.	NDK domain-containing protein.	0.968
LCOR_05181.1	LCOR_11867.1	A0A068RVX9	A0A068SIC0	Uncharacterized protein.	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family.	0.999
LCOR_06512.1	LCOR_01400.1	A0A068S0I2	A0A068RJ48	30s ribosomal protein s16.	S15 ns1 rna-binding domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

51

average node degree:

9.27

avg. local clustering coefficient:

0.941

expected number of edges:

18

PPI enrichment p-value:

1.52e-10

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0019941

Modification-dependent protein catabolic process

2 of 2

3.03

1.54

0.0053

GO:0010498

Proteasomal protein catabolic process

2 of 2

3.03

1.54

0.0053

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000502

Proteasome complex

2 of 5

2.64

1.78

0.0021

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1106

Proteasomal protein catabolic process, and ThiF family

2 of 5

2.64

1.15

0.0196

CL:687

FtsH Extracellular, and Prohibitin homologues

2 of 6

2.56

1.14

0.0196

CL:3005

Mixed, incl. Acetyltransferase (GNAT) domain, and Putative zinc- or iron-chelating domain

2 of 6

2.56

1.14

0.0196

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-1236975

Antigen processing-Cross presentation

2 of 11

2.29

1.79

0.0016

MAP-983169

Class I MHC mediated antigen processing & presentation

2 of 15

2.16

1.75

0.0016

MAP-1280218

Adaptive Immune System

2 of 15

2.16

1.75

0.0016

MAP-168256

Immune System

2 of 54

1.6

1.17

0.0075

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0000502

Proteasome complex

2 of 17

2.1

0.98

0.0312

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00244

Prohibitin homologues

2 of 3

2.86

2.02

0.00095

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About