STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_06711.1Protein aar2 homolog. (357 aa)    
Predicted Functional Partners:
LCOR_03854.1
Pre-mrna-processing-splicing factor 8.
    
 
 0.991
LCOR_11325.1
116 kDa u5 small nuclear ribonucleoproteincomponent-like.
    
 
 0.961
LCOR_09502.1
Protein sgt1.
    
 
 0.947
LCOR_03052.1
Sec63-domain-containing protein.
    
 
 0.935
LCOR_03842.1
Uncharacterized protein.
   
 
 0.880
LCOR_06529.1
E2f-associated phosphoprotein.
    
 
 0.871
MEF1
Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.
    
 
 0.785
LCOR_02419.1
Uncharacterized protein.
    
 
 0.772
LCOR_01892.1
Elongation factor 2.
    
 
 0.758
LCOR_11616.1
Translation elongation factor 2.
    
 
 0.758
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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