STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_07393.1Retrotransposon ty3-gypsy subclass. (209 aa)    
Predicted Functional Partners:
LCOR_12016.1
Retrotransposable element tf2 155 kDa proteintype 1-like.
 
     0.950
LCOR_11899.1
Integrase core domain containing protein.
 
     0.946
LCOR_07394.1
Retrotransposable element tf2 155 kDa proteintype 1-like.
 
     0.935
LCOR_12366.1
RT_RNaseH domain-containing protein.
 
     0.893
LCOR_12044.1
Integrase core domain protein.
 
     0.866
LCOR_07392.1
Integrase catalytic domain-containing protein.
 
     0.819
LCOR_12124.1
Integrase catalytic domain-containing protein.
 
     0.816
LCOR_12007.1
Krab-a domain-containing protein.
 
     0.799
LCOR_11998.1
Integrase core domain protein.
 
     0.752
LCOR_11982.1
Zinc finger.
 
     0.747
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.