STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_07893.1Uncharacterized protein. (715 aa)    
Predicted Functional Partners:
LCOR_09793.1
Uncharacterized protein.
   
 
 0.906
LCOR_06429.1
C6 transcription factor.
    
 
 0.879
LCOR_10926.1
Actin-like 6a; Belongs to the actin family.
    
 
 0.841
LCOR_00616.1
Histone H3; Belongs to the histone H3 family.
    
 0.812
LCOR_01977.1
Histone H3; Belongs to the histone H3 family.
    
 0.812
LCOR_00514.1
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.785
LCOR_05326.1
Histone deacetylase rpd3.
    
 0.785
LCOR_06211.1
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.785
LCOR_00252.1
Histone deacetylase.
    
 0.768
LCOR_03469.1
Acetylpolyamine aminohydrolase.
    
 0.768
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.