STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_07754.1Uncharacterized protein. (108 aa)    
Predicted Functional Partners:
LCOR_02895.1
Ribosomal l24 domain containing 1.
   
 
 0.990
LCOR_09861.1
Rna-binding domain-containing protein.
   
   0.990
LCOR_08710.1
60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.985
LCOR_02805.1
Protein MAK16; Belongs to the MAK16 family.
   
   0.983
LCOR_07599.1
Ribosome biogenesis protein brx1.
   
 
 0.979
LCOR_00362.1
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
 
 0.977
LCOR_08246.1
Nop52-domain-containing protein.
   
   0.977
LCOR_09289.1
Ribosome production factor 2 homolog.
   
 
 0.975
LCOR_04843.1
Rrna processing protein ebp2.
   
   0.974
LCOR_10744.1
Noc2-domain-containing protein.
   
 
 0.969
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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