STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_09202.1Elongator complex protein 6. (277 aa)    
Predicted Functional Partners:
LCOR_09807.1
Elongator complex protein 4.
   
 0.977
LCOR_00836.1
Uncharacterized protein.
    
 0.907
LCOR_07549.1
DPBB_1 domain-containing protein.
    
 0.861
LCOR_08353.1
DPBB_1 domain-containing protein.
    
 0.861
LCOR_09504.1
Uncharacterized protein.
    
 0.861
LCOR_09429.1
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
   
 0.709
LCOR_03844.1
Elongator complex protein 1.
    
 0.702
LCOR_11067.1
Pol ii transcription elongation factor.
    
 0.702
LCOR_01838.1
Sarcosine oxidase.
    
   0.586
LCOR_04380.1
L-saccharopine oxidase.
    
   0.586
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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