LCOR_08192.1 protein (Lichtheimia corymbifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LCOR_08192.1

Uncharacterized protein. (472 aa)

Predicted Functional Partners:

LCOR_07263.1

0.768

LCOR_11150.1

0.715

LCOR_00616.1

0.689

LCOR_01977.1

0.689

LCOR_03973.1

0.682

LCOR_01001.1

0.674

LCOR_04112.1

0.670

LCOR_06544.1

0.670

LCOR_01979.1

0.657

LCOR_01974.1

0.657

Your Current Organism:

Lichtheimia corymbifera

NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LCOR_00616.1	LCOR_01001.1	A0A068RRC0	A0A068RHQ2	Histone H3; Belongs to the histone H3 family.	Histone H2A; Belongs to the histone H2A family.	0.987
LCOR_00616.1	LCOR_01974.1	A0A068RRC0	A0A068RQP6	Histone H3; Belongs to the histone H3 family.	Histone H2B; Belongs to the histone H2B family.	0.995
LCOR_00616.1	LCOR_01979.1	A0A068RRC0	A0A068RKT7	Histone H3; Belongs to the histone H3 family.	Histone H2B; Belongs to the histone H2B family.	0.995
LCOR_00616.1	LCOR_03973.1	A0A068RRC0	A0A068RRC1	Histone H3; Belongs to the histone H3 family.	Gcn5p.	0.973
LCOR_00616.1	LCOR_04112.1	A0A068RRC0	A0A068RSR6	Histone H3; Belongs to the histone H3 family.	Tata-box-binding protein.	0.900
LCOR_00616.1	LCOR_06544.1	A0A068RRC0	A0A068S0L5	Histone H3; Belongs to the histone H3 family.	Tata-box-binding protein.	0.900
LCOR_00616.1	LCOR_08192.1	A0A068RRC0	A0A068S7J3	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.689
LCOR_01001.1	LCOR_00616.1	A0A068RHQ2	A0A068RRC0	Histone H2A; Belongs to the histone H2A family.	Histone H3; Belongs to the histone H3 family.	0.987
LCOR_01001.1	LCOR_01974.1	A0A068RHQ2	A0A068RQP6	Histone H2A; Belongs to the histone H2A family.	Histone H2B; Belongs to the histone H2B family.	0.980
LCOR_01001.1	LCOR_01977.1	A0A068RHQ2	A0A068SAC5	Histone H2A; Belongs to the histone H2A family.	Histone H3; Belongs to the histone H3 family.	0.987
LCOR_01001.1	LCOR_01979.1	A0A068RHQ2	A0A068RKT7	Histone H2A; Belongs to the histone H2A family.	Histone H2B; Belongs to the histone H2B family.	0.980
LCOR_01001.1	LCOR_03973.1	A0A068RHQ2	A0A068RRC1	Histone H2A; Belongs to the histone H2A family.	Gcn5p.	0.927
LCOR_01001.1	LCOR_04112.1	A0A068RHQ2	A0A068RSR6	Histone H2A; Belongs to the histone H2A family.	Tata-box-binding protein.	0.921
LCOR_01001.1	LCOR_06544.1	A0A068RHQ2	A0A068S0L5	Histone H2A; Belongs to the histone H2A family.	Tata-box-binding protein.	0.921
LCOR_01001.1	LCOR_08192.1	A0A068RHQ2	A0A068S7J3	Histone H2A; Belongs to the histone H2A family.	Uncharacterized protein.	0.674
LCOR_01974.1	LCOR_00616.1	A0A068RQP6	A0A068RRC0	Histone H2B; Belongs to the histone H2B family.	Histone H3; Belongs to the histone H3 family.	0.995
LCOR_01974.1	LCOR_01001.1	A0A068RQP6	A0A068RHQ2	Histone H2B; Belongs to the histone H2B family.	Histone H2A; Belongs to the histone H2A family.	0.980
LCOR_01974.1	LCOR_01977.1	A0A068RQP6	A0A068SAC5	Histone H2B; Belongs to the histone H2B family.	Histone H3; Belongs to the histone H3 family.	0.995
LCOR_01974.1	LCOR_03973.1	A0A068RQP6	A0A068RRC1	Histone H2B; Belongs to the histone H2B family.	Gcn5p.	0.882
LCOR_01974.1	LCOR_04112.1	A0A068RQP6	A0A068RSR6	Histone H2B; Belongs to the histone H2B family.	Tata-box-binding protein.	0.795

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

11

PPI enrichment p-value:

< 1.0e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0140647

P450-containing electron transport chain

2 of 2

2.93

0.87

0.0273

GO:0006631

Fatty acid metabolic process

4 of 135

1.4

0.72

0.0273

GO:0006633

Fatty acid biosynthetic process

3 of 55

1.66

0.69

0.0439

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004312

Fatty acid synthase activity

3 of 24

2.02

1.17

0.0056

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4546

Mixed, incl. Valine, leucine and isoleucine degradation, and Fatty acid metabolic process

6 of 118

1.63

2.14

3.72e-06

CL:4547

Mixed, incl. Valine, leucine and isoleucine degradation, and TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain

5 of 109

1.59

1.88

1.88e-05

CL:4738

Mixed, incl. Thioesterase domain, and Quinone oxidoreductase/zeta-crystallin, conserved site

2 of 5

2.53

1.3

0.0041

CL:12660

Protein import into peroxisome matrix, and acyl-CoA binding

2 of 6

2.45

1.25

0.0050

CL:4676

Mixed, incl. Biotin-binding site, and Fatty acid metabolism

2 of 8

2.32

1.15

0.0074

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00061

Fatty acid biosynthesis

4 of 33

2.01

2.39

1.08e-05

map00780

Biotin metabolism

3 of 18

2.15

1.99

0.00013

map01212

Fatty acid metabolism

4 of 127

1.42

1.29

0.00060

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-2395516

Electron transport from NADPH to Ferredoxin

2 of 3

2.75

1.06

0.0119

MAP-9033241

Peroxisomal protein import

4 of 188

1.25

0.69

0.0244

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (18%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2024

Credits

Access

Info

About