STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_09230.1Atp-dependent rna helicase uap56. (442 aa)    
Predicted Functional Partners:
LCOR_02115.1
G-patch domain-containing protein.
   
 0.979
LCOR_10622.1
SAP domain-containing protein.
   
 0.978
LCOR_01699.1
RRM domain-containing protein.
   
 0.976
LCOR_06499.1
RRM domain-containing protein.
   
 0.976
LCOR_00551.1
Rna-binding protein 8a.
   
 0.974
LCOR_09067.1
Dead-domain-containing protein; Belongs to the DEAD box helicase family.
  
0.974
LCOR_01919.1
Uncharacterized protein.
   
 0.969
LCOR_10464.1
Udp-glucose epimerase.
   
 0.969
LCOR_09546.1
RRM domain-containing protein.
   
 0.958
LCOR_06548.1
Mago nashi domain protein.
   
 0.931
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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