LCOR_09546.1 protein (Lichtheimia corymbifera)

Nodes:

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query proteins and first shell of interactors

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second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LCOR_09546.1

RRM domain-containing protein. (371 aa)

Predicted Functional Partners:

LCOR_03846.1

0.975

LCOR_10772.1

0.975

LCOR_09067.1

0.969

LCOR_02115.1

0.960

LCOR_02852.1

0.958

LCOR_06548.1

0.958

LCOR_09230.1

0.958

LCOR_00551.1

0.949

LCOR_01498.1

0.932

LCOR_07556.1

0.932

Your Current Organism:

Lichtheimia corymbifera

NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LCOR_00551.1	LCOR_01498.1	A0A068RII0	A0A068RIF3	Rna-binding protein 8a.	Related to mrna export factor mex67.	0.902
LCOR_00551.1	LCOR_02115.1	A0A068RII0	A0A068RJR3	Rna-binding protein 8a.	G-patch domain-containing protein.	0.685
LCOR_00551.1	LCOR_02852.1	A0A068RII0	A0A068RNA9	Rna-binding protein 8a.	Atp-dependent rna helicase uap56.	0.974
LCOR_00551.1	LCOR_03846.1	A0A068RII0	A0A068RTR0	Rna-binding protein 8a.	Uncharacterized protein.	0.968
LCOR_00551.1	LCOR_06548.1	A0A068RII0	A0A068S086	Rna-binding protein 8a.	Mago nashi domain protein.	0.999
LCOR_00551.1	LCOR_07556.1	A0A068RII0	A0A068S5L8	Rna-binding protein 8a.	NTF2 domain-containing protein.	0.902
LCOR_00551.1	LCOR_09067.1	A0A068RII0	A0A068S7D9	Rna-binding protein 8a.	Dead-domain-containing protein; Belongs to the DEAD box helicase family.	0.998
LCOR_00551.1	LCOR_09230.1	A0A068RII0	A0A068S973	Rna-binding protein 8a.	Atp-dependent rna helicase uap56.	0.974
LCOR_00551.1	LCOR_09546.1	A0A068RII0	A0A068S9N3	Rna-binding protein 8a.	RRM domain-containing protein.	0.949
LCOR_00551.1	LCOR_10772.1	A0A068RII0	A0A068SFC2	Rna-binding protein 8a.	Uncharacterized protein.	0.968
LCOR_01498.1	LCOR_00551.1	A0A068RIF3	A0A068RII0	Related to mrna export factor mex67.	Rna-binding protein 8a.	0.902
LCOR_01498.1	LCOR_02115.1	A0A068RIF3	A0A068RJR3	Related to mrna export factor mex67.	G-patch domain-containing protein.	0.801
LCOR_01498.1	LCOR_02852.1	A0A068RIF3	A0A068RNA9	Related to mrna export factor mex67.	Atp-dependent rna helicase uap56.	0.808
LCOR_01498.1	LCOR_03846.1	A0A068RIF3	A0A068RTR0	Related to mrna export factor mex67.	Uncharacterized protein.	0.999
LCOR_01498.1	LCOR_06548.1	A0A068RIF3	A0A068S086	Related to mrna export factor mex67.	Mago nashi domain protein.	0.664
LCOR_01498.1	LCOR_09067.1	A0A068RIF3	A0A068S7D9	Related to mrna export factor mex67.	Dead-domain-containing protein; Belongs to the DEAD box helicase family.	0.802
LCOR_01498.1	LCOR_09230.1	A0A068RIF3	A0A068S973	Related to mrna export factor mex67.	Atp-dependent rna helicase uap56.	0.808
LCOR_01498.1	LCOR_09546.1	A0A068RIF3	A0A068S9N3	Related to mrna export factor mex67.	RRM domain-containing protein.	0.932
LCOR_01498.1	LCOR_10772.1	A0A068RIF3	A0A068SFC2	Related to mrna export factor mex67.	Uncharacterized protein.	0.999
LCOR_02115.1	LCOR_00551.1	A0A068RJR3	A0A068RII0	G-patch domain-containing protein.	Rna-binding protein 8a.	0.685

page 1 of 6

Network Stats

number of nodes:

11

number of edges:

26

average node degree:

4.73

avg. local clustering coefficient:

0.847

expected number of edges:

24

PPI enrichment p-value:

0.404

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0043161

Proteasome-mediated ubiquitin-dependent protein catabolic process

5 of 240

1.44

1.13

0.0022

GO:0006511

Ubiquitin-dependent protein catabolic process

6 of 410

1.29

1.02

0.0022

GO:0019538

Protein metabolic process

9 of 2939

0.61

0.4

0.0189

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0034657

GID complex

2 of 4

2.82

1.08

0.0112

GO:0000151

Ubiquitin ligase complex

4 of 236

1.35

0.8

0.0155

GO:0140535

Intracellular protein-containing complex

5 of 577

1.06

0.65

0.0180

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:23827

Mixed, incl. CRA domain, and GID complex

7 of 16

2.76

7.26

9.01e-15

CL:23822

Mostly uncharacterized, incl. CRA domain, and Yip1 domain

8 of 55

2.29

6.21

1.94e-14

CL:23831

GID complex, and CRA domain

5 of 10

2.82

5.26

1.31e-10

CL:23834

CRA domain, and GID complex

4 of 5

3.03

4.36

9.84e-09

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0034657

GID complex

3 of 4

3.0

2.61

1.80e-05

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR016244

Tyrosine-protein kinase, HGF/MSP receptor

2 of 2

3.12

1.03

0.0142

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00429

Ig-like, plexins, transcription factors

2 of 13

2.31

0.79

0.0352

SM00630

Semaphorin domain

2 of 21

2.1

0.74

0.0423

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