STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_09862.1Vacuolar amino acid permease. (566 aa)    
Predicted Functional Partners:
LCOR_03960.1
Nadh-ubiquinone oxidoreductase complex 21 kdasubunit domain-containing protein.
    
   0.453
LCOR_11344.1
Nadh dehydrogenase subunit 4.
    
   0.453
LCOR_02962.1
D-galacturonic acid reductase.
   
 
 0.449
LCOR_05356.1
50s ribosomal protein l19.
    
   0.449
LCOR_08797.1
Oxidoreductase domain-containing protein.
   
 
 0.449
LCOR_03193.1
Ribosomal protein l15.
   
   0.447
LCOR_03256.1
Mitochondrial 37s ribosomal protein mrp4.
    
   0.443
LCOR_09486.1
Mfs general substrate transporter.
  
     0.439
LCOR_01343.1
Uncharacterized protein.
    
   0.438
LCOR_01820.1
Mitochondrial 54s ribosomal protein mrpl51.
    
   0.438
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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