STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_10032.1Probable atp-dependent rna helicase dhx35. (694 aa)    
Predicted Functional Partners:
LCOR_09991.1
CID domain-containing protein.
   
 0.995
LCOR_03378.1
Pre-mrna splicing factor.
   
 0.967
LCOR_02412.1
Alpha-l rna-binding motif-containing protein.
   
  0.966
LCOR_04616.1
Pre-mrna-splicing factor slu7.
    
 0.960
LCOR_07728.1
Probable atp-dependent rna helicase ddx49; Belongs to the DEAD box helicase family.
  
 0.960
LCOR_01638.1
Potential u3 snornp-associated helicase ecm16.
  
0.958
LCOR_02390.1
Cell cycle control protein.
   
 0.956
LCOR_04854.1
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
   
 0.955
LCOR_10028.1
U3 small nucleolar rna-associated protein 18homolog.
   
 0.954
LCOR_03180.1
Syf2 splicing factor family protein.
    
 0.953
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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